J4_4V6F_018

3D structure

PDB id

4V6F (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongation complex of the 70S ribosome with three tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

4V6F|1|CA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6F_018 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1378

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4V6F|1|CA|G|142
4V6F|1|CA|A|143
4V6F|1|CA|G|144
*
4V6F|1|CA|C|178
4V6F|1|CA|A|179
4V6F|1|CA|U|180
4V6F|1|CA|G|181
4V6F|1|CA|U|182
4V6F|1|CA|G|183
*
4V6F|1|CA|C|194
4V6F|1|CA|A|195
4V6F|1|CA|A|196
4V6F|1|CA|A|197
4V6F|1|CA|G|198
*
4V6F|1|CA|C|219
4V6F|1|CA|G|220
4V6F|1|CA|C|221

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CW

30S ribosomal protein S20