J4_4V6G_002

3D structure

PDB id

4V6G (explore in PDB, NAKB, or RNA 3D Hub)

Description

Initiation complex of 70S ribosome with two tRNAs and mRNA.

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GAG*CAUGUG*CAAAG*CGC

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6G_002 not in the Motif Atlas

Homologous match to J4_4LFB_002

Geometric discrepancy: 0.1164

The information below is about J4_4LFB_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_88771.1

Basepair signature

cWW-tSS-cWW-tSS-cWW-cWW-tWH-tWH-cSH-cWW

Number of instances in this motif group

1

Unit IDs

4V6G|1|AA|G|142
4V6G|1|AA|A|143
4V6G|1|AA|G|144
*
4V6G|1|AA|C|178
4V6G|1|AA|A|179
4V6G|1|AA|U|180
4V6G|1|AA|G|181
4V6G|1|AA|U|182
4V6G|1|AA|G|183
*
4V6G|1|AA|C|194
4V6G|1|AA|A|195
4V6G|1|AA|A|196
4V6G|1|AA|A|197
4V6G|1|AA|G|198
*
4V6G|1|AA|C|219
4V6G|1|AA|G|220
4V6G|1|AA|C|221

Current chains

Chain AA

16S RRNA (E.COLI NUMBERING)

Nearby chains

Chain AW

30S RIBOSOMAL PROTEIN S20