J4_4V6I_004
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACUAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 4V6I|1|CA|A|1026, 4V6I|1|CA|U|1029, 4V6I|1|CA|U|1031
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V6I_004 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.2083
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V6I|1|CA|A|622
4V6I|1|CA|A|623
4V6I|1|CA|G|624
*
4V6I|1|CA|C|975
4V6I|1|CA|G|976
4V6I|1|CA|A|977
4V6I|1|CA|A|978
4V6I|1|CA|A|979
4V6I|1|CA|G|980
*
4V6I|1|CA|C|1021
4V6I|1|CA|C|1022
4V6I|1|CA|A|1023
4V6I|1|CA|U|1024
4V6I|1|CA|A|1025
4V6I|1|CA|A|1026
4V6I|1|CA|A|1027
4V6I|1|CA|C|1028
4V6I|1|CA|U|1029
4V6I|1|CA|A|1030
4V6I|1|CA|U|1031
4V6I|1|CA|G|1032
*
4V6I|1|CA|U|1103
4V6I|1|CA|U|1104
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain AH
- 40S ribosomal protein rpS22 (S8p)
- Chain AL
- 40S ribosomal protein rpS23 (S12p)
- Chain AO
- 40S ribosomal protein rpS13 (S15p)
- Chain Bm
- 60S ribosomal protein rpL43 (L37ae)
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: