J4_4V6I_010
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- 4V6I|1|DA|G|2187
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V6I_010 not in the Motif Atlas
- Homologous match to J4_8C3A_006
- Geometric discrepancy: 0.1265
- The information below is about J4_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6I|1|DA|G|2130
4V6I|1|DA|A|2131
4V6I|1|DA|C|2132
4V6I|1|DA|U|2133
4V6I|1|DA|G|2134
*
4V6I|1|DA|C|2146
4V6I|1|DA|A|2147
4V6I|1|DA|U|2148
4V6I|1|DA|A|2149
4V6I|1|DA|G|2150
*
4V6I|1|DA|U|2186
4V6I|1|DA|G|2187
4V6I|1|DA|A|2188
4V6I|1|DA|U|2189
4V6I|1|DA|U|2190
*
4V6I|1|DA|A|2317
4V6I|1|DA|U|2318
4V6I|1|DA|U|2319
4V6I|1|DA|A|2320
4V6I|1|DA|A|2321
4V6I|1|DA|C|2322
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain Ac
- Unknown 40S ribosomal protein XS2
- Chain BB
- 60S ribosomal protein rpL2 (L2p)
- Chain Bm
- 60S ribosomal protein rpL43 (L37ae)
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: