J4_4V6I_013

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UAA*UC*GCU*AUG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6I_013 not in the Motif Atlas

Homologous match to J4_8C3A_009

Geometric discrepancy: 0.4689

The information below is about J4_8C3A_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6I|1|DA|U|3010
4V6I|1|DA|A|3011
4V6I|1|DA|A|3012
*
4V6I|1|DA|U|3042
4V6I|1|DA|C|3043
*
4V6I|1|DA|G|3098
4V6I|1|DA|C|3099
4V6I|1|DA|U|3100
*
4V6I|1|DA|A|3134
4V6I|1|DA|U|3135
4V6I|1|DA|G|3136

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BC

60S ribosomal protein rpL3 (L3p)

Chain BK

60S ribosomal protein rpL16 (L13p)

Chain BM

60S ribosomal protein rpL23 (L14p)