J4_4V6K_007

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6K_007 not in the Motif Atlas

Homologous match to J4_4WF9_007

Geometric discrepancy: 0.1412

The information below is about J4_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V6K|1|AB|A|1772
4V6K|1|AB|A|1773
4V6K|1|AB|C|1774
4V6K|1|AB|U|1775
4V6K|1|AB|G|1776
*
4V6K|1|AB|C|1788
4V6K|1|AB|A|1789
4V6K|1|AB|C|1790
4V6K|1|AB|A|1791
4V6K|1|AB|G|1792
*
4V6K|1|AB|U|1827
4V6K|1|AB|G|1828
4V6K|1|AB|A|1829
4V6K|1|AB|C|1830
*
4V6K|1|AB|G|1975
4V6K|1|AB|U|1976
4V6K|1|AB|A|1977
4V6K|1|AB|A|1978
4V6K|1|AB|U|1979

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AD

50S ribosomal protein L2

Chain BA

Small subunit ribosomal RNA; SSU rRNA