J4_4V6K_011

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

4V6K|1|BA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6K_011 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.3762

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V6K|1|BA|G|115
4V6K|1|BA|A|116
4V6K|1|BA|G|117
4V6K|1|BA|U|118
4V6K|1|BA|A|119
4V6K|1|BA|A|120
4V6K|1|BA|U|121
4V6K|1|BA|G|122
*
4V6K|1|BA|U|239
4V6K|1|BA|G|240
*
4V6K|1|BA|C|286
4V6K|1|BA|U|287
4V6K|1|BA|A|288
4V6K|1|BA|G|289
*
4V6K|1|BA|C|311
4V6K|1|BA|C|312

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BT

30S ribosomal protein S16