J4_4V6K_012

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

4V6K|1|BA|C|183

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6K_012 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.2799

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4V6K|1|BA|G|142
4V6K|1|BA|A|143
4V6K|1|BA|G|144
*
4V6K|1|BA|C|178
4V6K|1|BA|A|179
4V6K|1|BA|U|180
4V6K|1|BA|A|181
4V6K|1|BA|A|182
4V6K|1|BA|C|183
4V6K|1|BA|G|184
*
4V6K|1|BA|C|193
4V6K|1|BA|C|194
4V6K|1|BA|A|195
4V6K|1|BA|A|196
4V6K|1|BA|A|197
4V6K|1|BA|G|198
*
4V6K|1|BA|U|219
4V6K|1|BA|G|220
4V6K|1|BA|C|221

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BX

30S ribosomal protein S20