J4_4V6K_013
3D structure
- PDB id
- 4V6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural insights into cognate vs. near-cognate discrimination during decoding.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.25 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 4V6K|1|BA|G|818, 4V6K|1|BA|U|820
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V6K_013 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.3274
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_61885.6
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V6K|1|BA|G|575
4V6K|1|BA|C|576
4V6K|1|BA|G|577
*
4V6K|1|BA|C|764
4V6K|1|BA|G|765
4V6K|1|BA|A|766
4V6K|1|BA|A|767
4V6K|1|BA|A|768
4V6K|1|BA|G|769
*
4V6K|1|BA|C|810
4V6K|1|BA|C|811
4V6K|1|BA|G|812
4V6K|1|BA|U|813
4V6K|1|BA|A|814
4V6K|1|BA|A|815
4V6K|1|BA|A|816
4V6K|1|BA|C|817
4V6K|1|BA|G|818
4V6K|1|BA|A|819
4V6K|1|BA|U|820
4V6K|1|BA|G|821
*
4V6K|1|BA|C|879
4V6K|1|BA|C|880
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BL
- 30S ribosomal protein S8
- Chain BP
- 30S ribosomal protein S12
- Chain BS
- 30S ribosomal protein S15
- Chain BU
- 30S ribosomal protein S17
- Chain BY
- 30S ribosomal protein S21
Coloring options: