J4_4V6L_001

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

4V6L|1|AA|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6L_001 not in the Motif Atlas

Homologous match to J4_4LFB_001

Geometric discrepancy: 0.2974

The information below is about J4_4LFB_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V6L|1|AA|G|115
4V6L|1|AA|A|116
4V6L|1|AA|G|117
4V6L|1|AA|U|118
4V6L|1|AA|A|119
4V6L|1|AA|A|120
4V6L|1|AA|U|121
4V6L|1|AA|G|122
*
4V6L|1|AA|U|239
4V6L|1|AA|G|240
*
4V6L|1|AA|C|286
4V6L|1|AA|U|287
4V6L|1|AA|A|288
4V6L|1|AA|G|289
*
4V6L|1|AA|C|311
4V6L|1|AA|C|312

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S16

Chain AU

30S ribosomal protein S17