J4_4V6L_011

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

4V6L|1|BB|G|1341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6L_011 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.2108

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V6L|1|BB|U|1313
4V6L|1|BB|C|1314
*
4V6L|1|BB|G|1338
4V6L|1|BB|G|1339
4V6L|1|BB|U|1340
4V6L|1|BB|G|1341
4V6L|1|BB|A|1342
4V6L|1|BB|G|1343
*
4V6L|1|BB|C|1404
4V6L|1|BB|U|1405
*
4V6L|1|BB|A|1597
4V6L|1|BB|A|1598
4V6L|1|BB|U|1599
4V6L|1|BB|C|1600
4V6L|1|BB|G|1601
4V6L|1|BB|U|1602
4V6L|1|BB|A|1603

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BU

50S ribosomal protein L23