J4_4V6L_013

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6L_013 not in the Motif Atlas

Homologous match to J4_4WF9_007

Geometric discrepancy: 0.2281

The information below is about J4_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V6L|1|BB|A|1772
4V6L|1|BB|A|1773
4V6L|1|BB|C|1774
4V6L|1|BB|U|1775
4V6L|1|BB|G|1776
*
4V6L|1|BB|C|1788
4V6L|1|BB|A|1789
4V6L|1|BB|C|1790
4V6L|1|BB|A|1791
4V6L|1|BB|G|1792
*
4V6L|1|BB|U|1827
4V6L|1|BB|G|1828
4V6L|1|BB|A|1829
4V6L|1|BB|C|1830
*
4V6L|1|BB|G|1975
4V6L|1|BB|U|1976
4V6L|1|BB|A|1977
4V6L|1|BB|A|1978
4V6L|1|BB|U|1979

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

50S ribosomal protein L2