3D structure

PDB id
4V6M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the ribosome-SecYE complex in the membrane environment
Experimental method
ELECTRON MICROSCOPY
Resolution
7.1 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
4V6M|1|AA|U|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V6M_001 not in the Motif Atlas
Homologous match to J4_4LFB_001
Geometric discrepancy: 0.3593
The information below is about J4_4LFB_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

4V6M|1|AA|G|115
4V6M|1|AA|A|116
4V6M|1|AA|G|117
4V6M|1|AA|U|118
4V6M|1|AA|A|119
4V6M|1|AA|A|120
4V6M|1|AA|U|121
4V6M|1|AA|G|122
*
4V6M|1|AA|U|239
4V6M|1|AA|G|240
*
4V6M|1|AA|C|286
4V6M|1|AA|U|287
4V6M|1|AA|A|288
4V6M|1|AA|G|289
*
4V6M|1|AA|C|311
4V6M|1|AA|C|312

Current chains

Chain AA
16S RIBOSOMAL RNA

Nearby chains

Chain AP
30S ribosomal protein S16
Chain AQ
30S ribosomal protein S17

Coloring options:


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