J4_4V6M_008

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

4V6M|1|B8|G|1271, 4V6M|1|B8|A|1272, 4V6M|1|B8|U|1273, 4V6M|1|B8|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6M_008 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.1997

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4V6M|1|B8|C|1270
4V6M|1|B8|G|1271
4V6M|1|B8|A|1272
4V6M|1|B8|U|1273
4V6M|1|B8|A|1274
4V6M|1|B8|A|1275
4V6M|1|B8|A|1276
*
4V6M|1|B8|U|1294
4V6M|1|B8|C|1295
*
4V6M|1|B8|G|1645
4V6M|1|B8|C|1646
4V6M|1|B8|U|1647
4V6M|1|B8|U|1648
*
4V6M|1|B8|A|2009
4V6M|1|B8|G|2010

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BN

50S ribosomal protein L17

Chain BS

50S ribosomal protein L22