J4_4V6N_001

3D structure

PDB id

4V6N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (50S ribosome of class2 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

12.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4V6N|1|AB|U|403, 4V6N|1|AB|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6N_001 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.456

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V6N|1|AB|C|268
4V6N|1|AB|C|269
*
4V6N|1|AB|G|370
4V6N|1|AB|A|371
4V6N|1|AB|G|372
4V6N|1|AB|U|373
4V6N|1|AB|A|374
4V6N|1|AB|G|375
*
4V6N|1|AB|U|399
4V6N|1|AB|G|400
4V6N|1|AB|A|401
4V6N|1|AB|A|402
4V6N|1|AB|U|403
4V6N|1|AB|A|404
4V6N|1|AB|U|405
4V6N|1|AB|G|406
*
4V6N|1|AB|C|421
4V6N|1|AB|A|422
4V6N|1|AB|A|423
4V6N|1|AB|G|424

Current chains

Chain AB

23S ribosomal RNA

Nearby chains

Chain AI

50S ribosomal protein L9

Chain AZ

50S ribosomal protein L28