J4_4V6O_010

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

4V6O|1|BB|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6O_010 not in the Motif Atlas

Homologous match to J4_9DFE_004

Geometric discrepancy: 0.3047

The information below is about J4_9DFE_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V6O|1|BB|G|1310
4V6O|1|BB|G|1311
4V6O|1|BB|U|1312
4V6O|1|BB|U|1313
4V6O|1|BB|C|1314
*
4V6O|1|BB|G|1338
4V6O|1|BB|G|1339
4V6O|1|BB|U|1340
4V6O|1|BB|G|1341
4V6O|1|BB|A|1342
4V6O|1|BB|G|1343
*
4V6O|1|BB|C|1404
4V6O|1|BB|U|1405
*
4V6O|1|BB|A|1597
4V6O|1|BB|A|1598
4V6O|1|BB|U|1599
4V6O|1|BB|C|1600
4V6O|1|BB|G|1601
4V6O|1|BB|U|1602
4V6O|1|BB|A|1603
4V6O|1|BB|C|1604

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L34

Chain BV

50S ribosomal protein L23