J4_4V6O_019

3D structure

PDB id

4V6O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4a of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

14.7 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6O_019 not in the Motif Atlas

Homologous match to J4_7A0S_008

Geometric discrepancy: 0.1818

The information below is about J4_7A0S_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V6O|1|BB|A|1772
4V6O|1|BB|A|1773
4V6O|1|BB|C|1774
4V6O|1|BB|U|1775
4V6O|1|BB|G|1776
*
4V6O|1|BB|C|1788
4V6O|1|BB|A|1789
4V6O|1|BB|C|1790
4V6O|1|BB|A|1791
4V6O|1|BB|G|1792
*
4V6O|1|BB|U|1827
4V6O|1|BB|G|1828
4V6O|1|BB|A|1829
4V6O|1|BB|C|1830
*
4V6O|1|BB|G|1975
4V6O|1|BB|U|1976
4V6O|1|BB|A|1977
4V6O|1|BB|A|1978
4V6O|1|BB|U|1979

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BD

50S ribosomal protein L2