J4_4V6P_004
3D structure
- PDB id
- 4V6P (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.5 Å
Loop
- Sequence
- G(4SU)AG*CAC*GGU(7MG)UUGGG*CUCC
- Length
- 20 nucleotides
- Bulged bases
- 4V6P|1|AB|4SU|8, 4V6P|1|AB|7MG|46, 4V6P|1|AB|U|47, 4V6P|1|AB|U|48
- QA status
- Modified nucleotides: 4SU, 7MG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V6P_004 not in the Motif Atlas
- Homologous match to J4_7U2I_014
- Geometric discrepancy: 0.4615
- The information below is about J4_7U2I_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47701.1
- Basepair signature
- cWW-F-F-cWW-F-cWW-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
4V6P|1|AB|G|7
4V6P|1|AB|4SU|8
4V6P|1|AB|A|9
4V6P|1|AB|G|10
*
4V6P|1|AB|C|25
4V6P|1|AB|A|26
4V6P|1|AB|C|27
*
4V6P|1|AB|G|43
4V6P|1|AB|G|44
4V6P|1|AB|U|45
4V6P|1|AB|7MG|46
4V6P|1|AB|U|47
4V6P|1|AB|U|48
4V6P|1|AB|G|49
4V6P|1|AB|G|50
4V6P|1|AB|G|51
*
4V6P|1|AB|C|63
4V6P|1|AB|U|64
4V6P|1|AB|C|65
4V6P|1|AB|C|66
Current chains
- Chain AB
- A site tRNA
Nearby chains
- Chain AV
- 30S ribosomal protein S19
- Chain BB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BO
- 50S ribosomal protein L16
Coloring options: