J4_4V6P_006

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4V6P|1|BB|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6P_006 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.5112

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V6P|1|BB|C|268
4V6P|1|BB|C|269
*
4V6P|1|BB|G|370
4V6P|1|BB|A|371
4V6P|1|BB|G|372
4V6P|1|BB|U|373
4V6P|1|BB|A|374
4V6P|1|BB|G|375
*
4V6P|1|BB|U|399
4V6P|1|BB|G|400
4V6P|1|BB|A|401
4V6P|1|BB|A|402
4V6P|1|BB|U|403
4V6P|1|BB|A|404
4V6P|1|BB|U|405
4V6P|1|BB|G|406
*
4V6P|1|BB|C|421
4V6P|1|BB|A|422
4V6P|1|BB|A|423
4V6P|1|BB|G|424

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BI

50S ribosomal protein L9

Chain BZ

50S ribosomal protein L28