J4_4V6P_008

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

CAAG*CGAAG*CGAG*CGUUAAG

Length

20 nucleotides

Bulged bases

4V6P|1|BB|A|626, 4V6P|1|BB|A|654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6P|1|BB|C|601
4V6P|1|BB|A|602
4V6P|1|BB|A|603
4V6P|1|BB|G|604
*
4V6P|1|BB|C|624
4V6P|1|BB|G|625
4V6P|1|BB|A|626
4V6P|1|BB|A|627
4V6P|1|BB|G|628
*
4V6P|1|BB|C|635
4V6P|1|BB|G|636
4V6P|1|BB|A|637
4V6P|1|BB|G|638
*
4V6P|1|BB|C|650
4V6P|1|BB|G|651
4V6P|1|BB|U|652
4V6P|1|BB|U|653
4V6P|1|BB|A|654
4V6P|1|BB|A|655
4V6P|1|BB|G|656

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B6

50S ribosomal protein L35

Chain BF

50S ribosomal protein L4

Chain BN

50S ribosomal protein L15