J4_4V6P_010

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GGUUC*GGUGAG*CU*AAUCGUAC

Length

21 nucleotides

Bulged bases

4V6P|1|BB|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6P_010 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.2978

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

4V6P|1|BB|G|1310
4V6P|1|BB|G|1311
4V6P|1|BB|U|1312
4V6P|1|BB|U|1313
4V6P|1|BB|C|1314
*
4V6P|1|BB|G|1338
4V6P|1|BB|G|1339
4V6P|1|BB|U|1340
4V6P|1|BB|G|1341
4V6P|1|BB|A|1342
4V6P|1|BB|G|1343
*
4V6P|1|BB|C|1404
4V6P|1|BB|U|1405
*
4V6P|1|BB|A|1597
4V6P|1|BB|A|1598
4V6P|1|BB|U|1599
4V6P|1|BB|C|1600
4V6P|1|BB|G|1601
4V6P|1|BB|U|1602
4V6P|1|BB|A|1603
4V6P|1|BB|C|1604

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L34

Chain BV

50S ribosomal protein L23