J4_4V6P_016

3D structure

PDB id

4V6P (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 4b of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GAGUAAUGU*AUG*CUAG*CC

Length

18 nucleotides

Bulged bases

4V6P|1|AA|U|121, 4V6P|1|AA|U|239

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6P_016 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.3955

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4V6P|1|AA|G|115
4V6P|1|AA|A|116
4V6P|1|AA|G|117
4V6P|1|AA|U|118
4V6P|1|AA|A|119
4V6P|1|AA|A|120
4V6P|1|AA|U|121
4V6P|1|AA|G|122
4V6P|1|AA|U|123
*
4V6P|1|AA|A|238
4V6P|1|AA|U|239
4V6P|1|AA|G|240
*
4V6P|1|AA|C|286
4V6P|1|AA|U|287
4V6P|1|AA|A|288
4V6P|1|AA|G|289
*
4V6P|1|AA|C|311
4V6P|1|AA|C|312

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AS

30S ribosomal protein S16

Chain AT

30S ribosomal protein S17