J4_4V6Q_002

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

4V6Q|1|AA|C|183, 4V6Q|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6Q_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.3434

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4V6Q|1|AA|G|142
4V6Q|1|AA|A|143
4V6Q|1|AA|G|144
*
4V6Q|1|AA|C|178
4V6Q|1|AA|A|179
4V6Q|1|AA|U|180
4V6Q|1|AA|A|181
4V6Q|1|AA|A|182
4V6Q|1|AA|C|183
4V6Q|1|AA|G|184
*
4V6Q|1|AA|C|193
4V6Q|1|AA|C|194
4V6Q|1|AA|A|195
4V6Q|1|AA|A|196
4V6Q|1|AA|A|197
4V6Q|1|AA|G|198
*
4V6Q|1|AA|U|219
4V6Q|1|AA|G|220
4V6Q|1|AA|C|221

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AW

30S ribosomal protein S20