J4_4V6Q_006
3D structure
- PDB id
- 4V6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 11.5 Å
Loop
- Sequence
- CC*GAGUAG*UGAAUAUG*CAAG
- Length
- 20 nucleotides
- Bulged bases
- 4V6Q|1|BB|U|403, 4V6Q|1|BB|U|405
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V6Q_006 not in the Motif Atlas
- Homologous match to J4_5J7L_018
- Geometric discrepancy: 0.4533
- The information below is about J4_5J7L_018
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_45801.6
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V6Q|1|BB|C|268
4V6Q|1|BB|C|269
*
4V6Q|1|BB|G|370
4V6Q|1|BB|A|371
4V6Q|1|BB|G|372
4V6Q|1|BB|U|373
4V6Q|1|BB|A|374
4V6Q|1|BB|G|375
*
4V6Q|1|BB|U|399
4V6Q|1|BB|G|400
4V6Q|1|BB|A|401
4V6Q|1|BB|A|402
4V6Q|1|BB|U|403
4V6Q|1|BB|A|404
4V6Q|1|BB|U|405
4V6Q|1|BB|G|406
*
4V6Q|1|BB|C|421
4V6Q|1|BB|A|422
4V6Q|1|BB|A|423
4V6Q|1|BB|G|424
Current chains
- Chain BB
- 23S ribomosomal RNA
Nearby chains
- Chain BI
- 50S ribosomal protein L9
- Chain BZ
- 50S ribosomal protein L28
Coloring options: