J4_4V6Q_009

3D structure

PDB id

4V6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

4V6Q|1|BB|G|1271, 4V6Q|1|BB|A|1272, 4V6Q|1|BB|U|1273, 4V6Q|1|BB|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6Q_009 not in the Motif Atlas

Homologous match to J4_9DFE_003

Geometric discrepancy: 0.5282

The information below is about J4_9DFE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

4V6Q|1|BB|C|1270
4V6Q|1|BB|G|1271
4V6Q|1|BB|A|1272
4V6Q|1|BB|U|1273
4V6Q|1|BB|A|1274
4V6Q|1|BB|A|1275
4V6Q|1|BB|A|1276
*
4V6Q|1|BB|U|1294
4V6Q|1|BB|C|1295
*
4V6Q|1|BB|G|1645
4V6Q|1|BB|C|1646
4V6Q|1|BB|U|1647
4V6Q|1|BB|U|1648
*
4V6Q|1|BB|A|2009
4V6Q|1|BB|G|2010

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L32

Chain BP

50S ribosomal protein L17

Chain BU

50S ribosomal protein L22