J4_4V6Q_015
3D structure
- PDB id
- 4V6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 5 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 11.5 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*UGC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V6Q_015 not in the Motif Atlas
- Homologous match to J4_9DFE_010
- Geometric discrepancy: 0.2963
- The information below is about J4_9DFE_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.4
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V6Q|1|BB|G|2643
4V6Q|1|BB|G|2644
4V6Q|1|BB|G|2645
4V6Q|1|BB|C|2646
*
4V6Q|1|BB|G|2674
4V6Q|1|BB|A|2675
4V6Q|1|BB|C|2676
*
4V6Q|1|BB|G|2731
4V6Q|1|BB|G|2732
4V6Q|1|BB|A|2733
4V6Q|1|BB|A|2734
4V6Q|1|BB|G|2735
*
4V6Q|1|BB|U|2769
4V6Q|1|BB|G|2770
4V6Q|1|BB|C|2771
Current chains
- Chain BB
- 23S ribomosomal RNA
Nearby chains
- Chain BE
- 50S ribosomal protein L3
- Chain BH
- 50S ribosomal protein L6
- Chain BL
- 50S ribosomal protein L13
- Chain BM
- 50S ribosomal protein L14
Coloring options: