J4_4V6R_003

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

GCG*CGAAAG*CCGUAAACGAUG*CC

Length

23 nucleotides

Bulged bases

4V6R|1|AA|C|576, 4V6R|1|AA|A|816, 4V6R|1|AA|G|818, 4V6R|1|AA|A|819, 4V6R|1|AA|U|820

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6R_003 not in the Motif Atlas

Homologous match to J4_4LFB_003

Geometric discrepancy: 0.5389

The information below is about J4_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_14595.1

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

5

Unit IDs

4V6R|1|AA|G|575
4V6R|1|AA|C|576
4V6R|1|AA|G|577
*
4V6R|1|AA|C|764
4V6R|1|AA|G|765
4V6R|1|AA|A|766
4V6R|1|AA|A|767
4V6R|1|AA|A|768
4V6R|1|AA|G|769
*
4V6R|1|AA|C|810
4V6R|1|AA|C|811
4V6R|1|AA|G|812
4V6R|1|AA|U|813
4V6R|1|AA|A|814
4V6R|1|AA|A|815
4V6R|1|AA|A|816
4V6R|1|AA|C|817
4V6R|1|AA|G|818
4V6R|1|AA|A|819
4V6R|1|AA|U|820
4V6R|1|AA|G|821
*
4V6R|1|AA|C|879
4V6R|1|AA|C|880

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AK

30S ribosomal protein S8

Chain AN

30S ribosomal protein S11

Chain AO

30S ribosomal protein S12

Chain AR

30S ribosomal protein S15

Chain AT

30S ribosomal protein S17

Chain AX

30S ribosomal protein S21

Chain BB

Large subunit ribosomal RNA; LSU rRNA