J4_4V6R_006

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4V6R|1|BB|U|403, 4V6R|1|BB|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6R_006 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.4214

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V6R|1|BB|C|268
4V6R|1|BB|C|269
*
4V6R|1|BB|G|370
4V6R|1|BB|A|371
4V6R|1|BB|G|372
4V6R|1|BB|U|373
4V6R|1|BB|A|374
4V6R|1|BB|G|375
*
4V6R|1|BB|U|399
4V6R|1|BB|G|400
4V6R|1|BB|A|401
4V6R|1|BB|A|402
4V6R|1|BB|U|403
4V6R|1|BB|A|404
4V6R|1|BB|U|405
4V6R|1|BB|G|406
*
4V6R|1|BB|C|421
4V6R|1|BB|A|422
4V6R|1|BB|A|423
4V6R|1|BB|G|424

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BI

50S ribosomal protein L9

Chain BZ

50S ribosomal protein L28