J4_4V6R_017

3D structure

PDB id

4V6R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 6 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

11.5 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

4V6R|1|BB|G|1341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6R_017 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.2726

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V6R|1|BB|U|1313
4V6R|1|BB|C|1314
*
4V6R|1|BB|G|1338
4V6R|1|BB|G|1339
4V6R|1|BB|U|1340
4V6R|1|BB|G|1341
4V6R|1|BB|A|1342
4V6R|1|BB|G|1343
*
4V6R|1|BB|C|1404
4V6R|1|BB|U|1405
*
4V6R|1|BB|A|1597
4V6R|1|BB|A|1598
4V6R|1|BB|U|1599
4V6R|1|BB|C|1600
4V6R|1|BB|G|1601
4V6R|1|BB|U|1602
4V6R|1|BB|A|1603

Current chains

Chain BB

23S ribomosomal RNA

Nearby chains

Chain BV

50S ribosomal protein L23