J4_4V6S_006

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

UCC*GGGUGAG*CU*AAUCGUA

Length

19 nucleotides

Bulged bases

4V6S|1|AB|G|1341

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6S_006 not in the Motif Atlas

Homologous match to J4_4WF9_006

Geometric discrepancy: 0.5456

The information below is about J4_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_48150.1

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

8

Unit IDs

4V6S|1|AB|U|1313
4V6S|1|AB|C|1314
4V6S|1|AB|C|1315
*
4V6S|1|AB|G|1337
4V6S|1|AB|G|1338
4V6S|1|AB|G|1339
4V6S|1|AB|U|1340
4V6S|1|AB|G|1341
4V6S|1|AB|A|1342
4V6S|1|AB|G|1343
*
4V6S|1|AB|C|1404
4V6S|1|AB|U|1405
*
4V6S|1|AB|A|1597
4V6S|1|AB|A|1598
4V6S|1|AB|U|1599
4V6S|1|AB|C|1600
4V6S|1|AB|G|1601
4V6S|1|AB|U|1602
4V6S|1|AB|A|1603

Current chains

Chain AB

23S ribomosomal RNA

Nearby chains

Chain AV

50S ribosomal protein L23