J4_4V6S_011
3D structure
- PDB id
- 4V6S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.1 Å
Loop
- Sequence
- GGGC*GAC*GGAAG*UGC
- Length
- 15 nucleotides
- Bulged bases
- 4V6S|1|AB|G|2645
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V6S_011 not in the Motif Atlas
- Homologous match to J4_9DFE_010
- Geometric discrepancy: 0.3656
- The information below is about J4_9DFE_010
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_77044.5
- Basepair signature
- cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
4V6S|1|AB|G|2643
4V6S|1|AB|G|2644
4V6S|1|AB|G|2645
4V6S|1|AB|C|2646
*
4V6S|1|AB|G|2674
4V6S|1|AB|A|2675
4V6S|1|AB|C|2676
*
4V6S|1|AB|G|2731
4V6S|1|AB|G|2732
4V6S|1|AB|A|2733
4V6S|1|AB|A|2734
4V6S|1|AB|G|2735
*
4V6S|1|AB|U|2769
4V6S|1|AB|G|2770
4V6S|1|AB|C|2771
Current chains
- Chain AB
- 23S ribomosomal RNA
Nearby chains
- Chain AE
- 50S ribosomal protein L3
- Chain AH
- 50S ribosomal protein L6
- Chain AL
- 50S ribosomal protein L13
- Chain AM
- 50S ribosomal protein L14
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