J4_4V6S_014
3D structure
- PDB id
- 4V6S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 13.1 Å
Loop
- Sequence
- GCG*CGAAAG*CCGUAAACGAUG*CC
- Length
- 23 nucleotides
- Bulged bases
- 4V6S|1|BA|C|576, 4V6S|1|BA|A|816, 4V6S|1|BA|A|819
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V6S_014 not in the Motif Atlas
- Homologous match to J4_4LFB_003
- Geometric discrepancy: 0.4722
- The information below is about J4_4LFB_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
4V6S|1|BA|G|575
4V6S|1|BA|C|576
4V6S|1|BA|G|577
*
4V6S|1|BA|C|764
4V6S|1|BA|G|765
4V6S|1|BA|A|766
4V6S|1|BA|A|767
4V6S|1|BA|A|768
4V6S|1|BA|G|769
*
4V6S|1|BA|C|810
4V6S|1|BA|C|811
4V6S|1|BA|G|812
4V6S|1|BA|U|813
4V6S|1|BA|A|814
4V6S|1|BA|A|815
4V6S|1|BA|A|816
4V6S|1|BA|C|817
4V6S|1|BA|G|818
4V6S|1|BA|A|819
4V6S|1|BA|U|820
4V6S|1|BA|G|821
*
4V6S|1|BA|C|879
4V6S|1|BA|C|880
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain AB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BJ
- 30S ribosomal protein S8
- Chain BM
- 30S ribosomal protein S11
- Chain BN
- 30S ribosomal protein S12
- Chain BQ
- 30S ribosomal protein S15
- Chain BS
- 30S ribosomal protein S17
- Chain BW
- 30S ribosomal protein S21
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