J4_4V6S_018

3D structure

PDB id

4V6S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural characterization of mRNA-tRNA translocation intermediates (class 3 of the six classes)

Experimental method

ELECTRON MICROSCOPY

Resolution

13.1 Å

Loop

Sequence

GAGUAAUGU*AUG*CUAG*CC

Length

18 nucleotides

Bulged bases

4V6S|1|BA|U|121, 4V6S|1|BA|G|122

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6S_018 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.4008

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4V6S|1|BA|G|115
4V6S|1|BA|A|116
4V6S|1|BA|G|117
4V6S|1|BA|U|118
4V6S|1|BA|A|119
4V6S|1|BA|A|120
4V6S|1|BA|U|121
4V6S|1|BA|G|122
4V6S|1|BA|U|123
*
4V6S|1|BA|A|238
4V6S|1|BA|U|239
4V6S|1|BA|G|240
*
4V6S|1|BA|C|286
4V6S|1|BA|U|287
4V6S|1|BA|A|288
4V6S|1|BA|G|289
*
4V6S|1|BA|C|311
4V6S|1|BA|C|312

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain BR

30S ribosomal protein S16

Chain BS

30S ribosomal protein S17