3D structure

PDB id
4V6T (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
Experimental method
ELECTRON MICROSCOPY
Resolution
8.3 Å

Loop

Sequence
GAGUAAUG*UG*CUAG*CC
Length
16 nucleotides
Bulged bases
4V6T|1|AA|U|121
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V6T_001 not in the Motif Atlas
Homologous match to J4_5J7L_001
Geometric discrepancy: 0.1169
The information below is about J4_5J7L_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_35578.3
Basepair signature
cWW-F-cWW-F-F-F-tHW-F-cWW-cWW
Number of instances in this motif group
2

Unit IDs

4V6T|1|AA|G|115
4V6T|1|AA|A|116
4V6T|1|AA|G|117
4V6T|1|AA|U|118
4V6T|1|AA|A|119
4V6T|1|AA|A|120
4V6T|1|AA|U|121
4V6T|1|AA|G|122
*
4V6T|1|AA|U|239
4V6T|1|AA|G|240
*
4V6T|1|AA|C|286
4V6T|1|AA|U|287
4V6T|1|AA|A|288
4V6T|1|AA|G|289
*
4V6T|1|AA|C|311
4V6T|1|AA|C|312

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AP
30S ribosomal protein S16
Chain AQ
30S ribosomal protein S17

Coloring options:


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