J4_4V6T_002

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

4V6T|1|AA|C|183, 4V6T|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6T_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.119

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4V6T|1|AA|G|142
4V6T|1|AA|A|143
4V6T|1|AA|G|144
*
4V6T|1|AA|C|178
4V6T|1|AA|A|179
4V6T|1|AA|U|180
4V6T|1|AA|A|181
4V6T|1|AA|A|182
4V6T|1|AA|C|183
4V6T|1|AA|G|184
*
4V6T|1|AA|C|193
4V6T|1|AA|C|194
4V6T|1|AA|A|195
4V6T|1|AA|A|196
4V6T|1|AA|A|197
4V6T|1|AA|G|198
*
4V6T|1|AA|U|219
4V6T|1|AA|G|220
4V6T|1|AA|C|221

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20