J4_4V6T_004
3D structure
- PDB id
- 4V6T (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.3 Å
Loop
- Sequence
- GUGG*CGUC*GAAGGUCGUC*GGCC
- Length
- 22 nucleotides
- Bulged bases
- 4V6T|1|AX|U|8, 4V6T|1|AX|U|48, 4V6T|1|AX|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V6T_004 not in the Motif Atlas
- Homologous match to J4_7U2I_014
- Geometric discrepancy: 0.5788
- The information below is about J4_7U2I_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47701.1
- Basepair signature
- cWW-F-F-cWW-F-cWW-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
4V6T|1|AX|G|7
4V6T|1|AX|U|8
4V6T|1|AX|G|9
4V6T|1|AX|G|10
*
4V6T|1|AX|C|26
4V6T|1|AX|G|27
4V6T|1|AX|U|28
4V6T|1|AX|C|29
*
4V6T|1|AX|G|43
4V6T|1|AX|A|44
4V6T|1|AX|A|45
4V6T|1|AX|G|46
4V6T|1|AX|G|47
4V6T|1|AX|U|48
4V6T|1|AX|C|49
4V6T|1|AX|G|50
4V6T|1|AX|U|51
4V6T|1|AX|C|52
*
4V6T|1|AX|G|64
4V6T|1|AX|G|65
4V6T|1|AX|C|66
4V6T|1|AX|C|67
Current chains
- Chain AX
- formyl-methionine specific initiator transfer RNA
Nearby chains
- Chain AM
- 30S ribosomal protein S13
- Chain AW
- SsrA-binding protein
- Chain B1
- 50S ribosomal protein L33
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