J4_4V6T_005

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4V6T|1|BA|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6T_005 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.0776

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

4V6T|1|BA|C|268
4V6T|1|BA|C|269
*
4V6T|1|BA|G|370
4V6T|1|BA|A|371
4V6T|1|BA|G|372
4V6T|1|BA|U|373
4V6T|1|BA|A|374
4V6T|1|BA|G|375
*
4V6T|1|BA|U|399
4V6T|1|BA|G|400
4V6T|1|BA|A|401
4V6T|1|BA|A|402
4V6T|1|BA|U|403
4V6T|1|BA|A|404
4V6T|1|BA|U|405
4V6T|1|BA|G|406
*
4V6T|1|BA|C|421
4V6T|1|BA|A|422
4V6T|1|BA|A|423
4V6T|1|BA|G|424

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain BX

50S ribosomal protein L28