J4_4V6T_010

3D structure

PDB id

4V6T (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the bacterial ribosome complexed by tmRNA-SmpB and EF-G during translocation and MLD-loading

Experimental method

ELECTRON MICROSCOPY

Resolution

8.3 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

4V6T|1|BA|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6T_010 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.0746

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

4V6T|1|BA|U|1313
4V6T|1|BA|C|1314
*
4V6T|1|BA|G|1338
4V6T|1|BA|G|1339
4V6T|1|BA|U|1340
4V6T|1|BA|G|1341
4V6T|1|BA|A|1342
4V6T|1|BA|G|1343
*
4V6T|1|BA|C|1404
4V6T|1|BA|U|1405
*
4V6T|1|BA|A|1597
4V6T|1|BA|A|1598
4V6T|1|BA|U|1599
4V6T|1|BA|C|1600
4V6T|1|BA|G|1601
4V6T|1|BA|U|1602
4V6T|1|BA|A|1603

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BT

50S ribosomal protein L23