3D structure

PDB id
4V6V (explore in PDB, NAKB, or RNA 3D Hub)
Description
Tetracycline resistance protein Tet(O) bound to the ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
9.8 Å

Loop

Sequence
CC*GAGUAG*UGAAUAUG*CAAG
Length
20 nucleotides
Bulged bases
4V6V|1|BA|U|405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V6V_007 not in the Motif Atlas
Homologous match to J4_5J7L_018
Geometric discrepancy: 0.248
The information below is about J4_5J7L_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

4V6V|1|BA|C|268
4V6V|1|BA|C|269
*
4V6V|1|BA|G|370
4V6V|1|BA|A|371
4V6V|1|BA|G|372
4V6V|1|BA|U|373
4V6V|1|BA|A|374
4V6V|1|BA|G|375
*
4V6V|1|BA|U|399
4V6V|1|BA|G|400
4V6V|1|BA|A|401
4V6V|1|BA|A|402
4V6V|1|BA|U|403
4V6V|1|BA|A|404
4V6V|1|BA|U|405
4V6V|1|BA|G|406
*
4V6V|1|BA|C|421
4V6V|1|BA|A|422
4V6V|1|BA|A|423
4V6V|1|BA|G|424

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain B1
50S ribosomal protein L28
Chain BL
50S ribosomal protein L9

Coloring options:


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