J4_4V6X_004

3D structure

PDB id

4V6X (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

5 Å

Loop

Sequence

CAAAUAU*AGG*CAUGUU*AG

Length

18 nucleotides

Bulged bases

4V6X|1|A5|A|2366, 4V6X|1|A5|U|2369, 4V6X|1|A5|U|2826, 4V6X|1|A5|U|2828

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V6X|1|A5|C|2365
4V6X|1|A5|A|2366
4V6X|1|A5|A|2367
4V6X|1|A5|A|2368
4V6X|1|A5|U|2369
4V6X|1|A5|A|2370
4V6X|1|A5|U|2371
*
4V6X|1|A5|A|2389
4V6X|1|A5|G|2390
4V6X|1|A5|G|2391
*
4V6X|1|A5|C|2824
4V6X|1|A5|A|2825
4V6X|1|A5|U|2826
4V6X|1|A5|G|2827
4V6X|1|A5|U|2828
4V6X|1|A5|U|2829
*
4V6X|1|A5|A|3856
4V6X|1|A5|G|3857

Current chains

Chain A5

28S ribosomal RNA

Nearby chains

Chain CP

60S ribosomal protein L17

Chain CR

60S ribosomal protein L19

Chain Cd

60S ribosomal protein L31