J4_4V6X_005
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 4V6X|1|A5|C|2437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V6X_005 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.1446
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
4V6X|1|A5|G|2406
4V6X|1|A5|G|2407
4V6X|1|A5|U|2408
4V6X|1|A5|U|2409
4V6X|1|A5|C|2410
*
4V6X|1|A5|G|2434
4V6X|1|A5|G|2435
4V6X|1|A5|U|2436
4V6X|1|A5|C|2437
4V6X|1|A5|A|2438
4V6X|1|A5|G|2439
*
4V6X|1|A5|U|2538
4V6X|1|A5|C|2539
*
4V6X|1|A5|G|2777
4V6X|1|A5|G|2778
4V6X|1|A5|C|2779
4V6X|1|A5|C|2780
4V6X|1|A5|G|2781
4V6X|1|A5|U|2782
4V6X|1|A5|A|2783
4V6X|1|A5|C|2784
Current chains
- Chain A5
- 28S ribosomal RNA
Nearby chains
- Chain A8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain CR
- 60S ribosomal protein L19
- Chain CX
- 60S ribosomal protein L23a
- Chain Cg
- 60S ribosomal protein L34
- Chain Ch
- 60S ribosomal protein L35
- Chain Cj
- 60S ribosomal protein L37
- Chain Ck
- 60S ribosomal protein L38
- Chain Cl
- 60S ribosomal protein L39
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