J4_4V6X_014
3D structure
- PDB id
- 4V6X (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5 Å
Loop
- Sequence
- GUGG*UGC*GAGGUCGAU*AUCC
- Length
- 20 nucleotides
- Bulged bases
- 4V6X|1|BC|U|8, 4V6X|1|BC|U|46, 4V6X|1|BC|C|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_4V6X_014 not in the Motif Atlas
- Homologous match to J4_7U2I_014
- Geometric discrepancy: 0.3171
- The information below is about J4_7U2I_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47701.1
- Basepair signature
- cWW-F-F-cWW-F-cWW-cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
4V6X|1|BC|G|7
4V6X|1|BC|U|8
4V6X|1|BC|G|9
4V6X|1|BC|G|10
*
4V6X|1|BC|U|24
4V6X|1|BC|G|25
4V6X|1|BC|C|26
*
4V6X|1|BC|G|42
4V6X|1|BC|A|43
4V6X|1|BC|G|44
4V6X|1|BC|G|45
4V6X|1|BC|U|46
4V6X|1|BC|C|47
4V6X|1|BC|G|48
4V6X|1|BC|A|49
4V6X|1|BC|U|50
*
4V6X|1|BC|A|62
4V6X|1|BC|U|63
4V6X|1|BC|C|64
4V6X|1|BC|C|65
Current chains
- Chain BC
- E-tRNA
Nearby chains
- Chain Ah
- Plasminogen activator inhibitor 1 RNA-binding protein
- Chain B2
- Small subunit ribosomal RNA; SSU rRNA
- Chain Co
- 60S ribosomal protein L36a
- Chain Cz
- 60S ribosomal protein L10a
Coloring options: