J4_4V6Z_018

3D structure

PDB id

4V6Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in classic pre-translocation state (pre1b)

Experimental method

ELECTRON MICROSCOPY

Resolution

12 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V6Z_018 not in the Motif Atlas

Homologous match to J4_4WF9_007

Geometric discrepancy: 0.2683

The information below is about J4_4WF9_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.6

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

4V6Z|1|BA|A|1772
4V6Z|1|BA|A|1773
4V6Z|1|BA|C|1774
4V6Z|1|BA|U|1775
4V6Z|1|BA|G|1776
*
4V6Z|1|BA|C|1788
4V6Z|1|BA|A|1789
4V6Z|1|BA|C|1790
4V6Z|1|BA|A|1791
4V6Z|1|BA|G|1792
*
4V6Z|1|BA|U|1827
4V6Z|1|BA|G|1828
4V6Z|1|BA|A|1829
4V6Z|1|BA|C|1830
*
4V6Z|1|BA|G|1975
4V6Z|1|BA|U|1976
4V6Z|1|BA|A|1977
4V6Z|1|BA|A|1978
4V6Z|1|BA|U|1979

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain BC

50S ribosomal protein L2