J4_4V70_006

3D structure

PDB id

4V70 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre3)

Experimental method

ELECTRON MICROSCOPY

Resolution

17 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

4V70|1|BA|U|405

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V70_006 not in the Motif Atlas

Homologous match to J4_9DFE_001

Geometric discrepancy: 0.4539

The information below is about J4_9DFE_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4V70|1|BA|C|268
4V70|1|BA|C|269
*
4V70|1|BA|G|370
4V70|1|BA|A|371
4V70|1|BA|G|372
4V70|1|BA|U|373
4V70|1|BA|A|374
4V70|1|BA|G|375
*
4V70|1|BA|U|399
4V70|1|BA|G|400
4V70|1|BA|A|401
4V70|1|BA|A|402
4V70|1|BA|U|403
4V70|1|BA|A|404
4V70|1|BA|U|405
4V70|1|BA|G|406
*
4V70|1|BA|C|421
4V70|1|BA|A|422
4V70|1|BA|A|423
4V70|1|BA|G|424

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BH

50S ribosomal protein L9

Chain BX

50S ribosomal protein L28