J4_4V71_003

3D structure

PDB id

4V71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

4V71|1|AA|U|121

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V71_003 not in the Motif Atlas

Homologous match to J4_6CZR_027

Geometric discrepancy: 0.333

The information below is about J4_6CZR_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.2

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4V71|1|AA|G|115
4V71|1|AA|A|116
4V71|1|AA|G|117
4V71|1|AA|U|118
4V71|1|AA|A|119
4V71|1|AA|A|120
4V71|1|AA|U|121
4V71|1|AA|G|122
*
4V71|1|AA|U|239
4V71|1|AA|G|240
*
4V71|1|AA|C|286
4V71|1|AA|U|287
4V71|1|AA|A|288
4V71|1|AA|G|289
*
4V71|1|AA|C|311
4V71|1|AA|C|312

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AP

30S ribosomal protein S16

Chain AQ

30S ribosomal protein S17