J4_4V71_008

3D structure

PDB id

4V71 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate pre-translocation state (pre2)

Experimental method

ELECTRON MICROSCOPY

Resolution

20 Å

Loop

Sequence

CAAG*CGAAG*CGAGU*GCGUUAAG

Length

22 nucleotides

Bulged bases

4V71|1|BA|U|653, 4V71|1|BA|A|654

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V71_008 not in the Motif Atlas

Homologous match to J4_4WF9_003

Geometric discrepancy: 0.4401

The information below is about J4_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69347.1

Basepair signature

cWW-F-F-F-F-cWW-F-F-F-cWW-F-F-F-cWW-F-F

Number of instances in this motif group

1

Unit IDs

4V71|1|BA|C|601
4V71|1|BA|A|602
4V71|1|BA|A|603
4V71|1|BA|G|604
*
4V71|1|BA|C|624
4V71|1|BA|G|625
4V71|1|BA|A|626
4V71|1|BA|A|627
4V71|1|BA|G|628
*
4V71|1|BA|C|635
4V71|1|BA|G|636
4V71|1|BA|A|637
4V71|1|BA|G|638
4V71|1|BA|U|639
*
4V71|1|BA|G|649
4V71|1|BA|C|650
4V71|1|BA|G|651
4V71|1|BA|U|652
4V71|1|BA|U|653
4V71|1|BA|A|654
4V71|1|BA|A|655
4V71|1|BA|G|656

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B3

50S ribosomal protein L35

Chain BE

50S ribosomal protein L4

Chain BL

50S ribosomal protein L15