J4_4V72_004

3D structure

PDB id

4V72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

4V72|1|AA|C|183, 4V72|1|AA|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V72_004 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.2533

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4V72|1|AA|G|142
4V72|1|AA|A|143
4V72|1|AA|G|144
*
4V72|1|AA|C|178
4V72|1|AA|A|179
4V72|1|AA|U|180
4V72|1|AA|A|181
4V72|1|AA|A|182
4V72|1|AA|C|183
4V72|1|AA|G|184
*
4V72|1|AA|C|193
4V72|1|AA|C|194
4V72|1|AA|A|195
4V72|1|AA|A|196
4V72|1|AA|A|197
4V72|1|AA|G|198
*
4V72|1|AA|U|219
4V72|1|AA|G|220
4V72|1|AA|C|221

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AT

30S ribosomal protein S20