J4_4V72_005

3D structure

PDB id

4V72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in hybrid pre-translocation state (pre4)

Experimental method

ELECTRON MICROSCOPY

Resolution

13 Å

Loop

Sequence

CGUAAAGCG*CGAAAG*CCGUAAACGAUG*CG

Length

29 nucleotides

Bulged bases

4V72|1|AA|A|572, 4V72|1|AA|C|576, 4V72|1|AA|A|815, 4V72|1|AA|C|817, 4V72|1|AA|G|818, 4V72|1|AA|A|819, 4V72|1|AA|U|820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_4V72_005 not in the Motif Atlas

Homologous match to J4_4LFB_003

Geometric discrepancy: 0.5903

The information below is about J4_4LFB_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61885.6

Basepair signature

cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F

Number of instances in this motif group

4

Unit IDs

4V72|1|AA|C|569
4V72|1|AA|G|570
4V72|1|AA|U|571
4V72|1|AA|A|572
4V72|1|AA|A|573
4V72|1|AA|A|574
4V72|1|AA|G|575
4V72|1|AA|C|576
4V72|1|AA|G|577
*
4V72|1|AA|C|764
4V72|1|AA|G|765
4V72|1|AA|A|766
4V72|1|AA|A|767
4V72|1|AA|A|768
4V72|1|AA|G|769
*
4V72|1|AA|C|810
4V72|1|AA|C|811
4V72|1|AA|G|812
4V72|1|AA|U|813
4V72|1|AA|A|814
4V72|1|AA|A|815
4V72|1|AA|A|816
4V72|1|AA|C|817
4V72|1|AA|G|818
4V72|1|AA|A|819
4V72|1|AA|U|820
4V72|1|AA|G|821
*
4V72|1|AA|C|880
4V72|1|AA|G|881

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AL

30S ribosomal protein S12

Chain AO

30S ribosomal protein S15

Chain AQ

30S ribosomal protein S17