3D structure

PDB id
4V77 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)
Experimental method
ELECTRON MICROSCOPY
Resolution
17 Å

Loop

Sequence
CC*GAGUAG*UGAAUAUG*CAAG
Length
20 nucleotides
Bulged bases
4V77|1|BA|U|405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V77_006 not in the Motif Atlas
Homologous match to J4_4WF9_001
Geometric discrepancy: 0.348
The information below is about J4_4WF9_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

4V77|1|BA|C|268
4V77|1|BA|C|269
*
4V77|1|BA|G|370
4V77|1|BA|A|371
4V77|1|BA|G|372
4V77|1|BA|U|373
4V77|1|BA|A|374
4V77|1|BA|G|375
*
4V77|1|BA|U|399
4V77|1|BA|G|400
4V77|1|BA|A|401
4V77|1|BA|A|402
4V77|1|BA|U|403
4V77|1|BA|A|404
4V77|1|BA|U|405
4V77|1|BA|G|406
*
4V77|1|BA|C|421
4V77|1|BA|A|422
4V77|1|BA|A|423
4V77|1|BA|G|424

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BH
50S ribosomal protein L9
Chain BX
50S ribosomal protein L28

Coloring options:


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