3D structure

PDB id
4V77 (explore in PDB, NAKB, or RNA 3D Hub)
Description
E. coli 70S-fMetVal-tRNAVal-tRNAfMet complex in intermediate post-translocation state (post2b)
Experimental method
ELECTRON MICROSCOPY
Resolution
17 Å

Loop

Sequence
CGAUAAA*UC*GCUU*AG
Length
15 nucleotides
Bulged bases
4V77|1|BA|G|1271, 4V77|1|BA|A|1272, 4V77|1|BA|U|1273, 4V77|1|BA|A|1275, 4V77|1|BA|U|1647
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_4V77_009 not in the Motif Atlas
Homologous match to J4_5J7L_021
Geometric discrepancy: 0.34
The information below is about J4_5J7L_021
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_64571.5
Basepair signature
cWW-F-cWW-tSS-cWW-F-cWW
Number of instances in this motif group
4

Unit IDs

4V77|1|BA|C|1270
4V77|1|BA|G|1271
4V77|1|BA|A|1272
4V77|1|BA|U|1273
4V77|1|BA|A|1274
4V77|1|BA|A|1275
4V77|1|BA|A|1276
*
4V77|1|BA|U|1294
4V77|1|BA|C|1295
*
4V77|1|BA|G|1645
4V77|1|BA|C|1646
4V77|1|BA|U|1647
4V77|1|BA|U|1648
*
4V77|1|BA|A|2009
4V77|1|BA|G|2010

Current chains

Chain BA
23S ribosomal RNA

Nearby chains

Chain BN
50S ribosomal protein L17
Chain BS
50S ribosomal protein L22

Coloring options:


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